IGD  Index of Genetic Differentiation
Download IGD Sample input file PDF manual
This program is based on calculation proposed by Pojskic (2005) and Pojskic et al. (2013). The purpose of this measurment is to estimate deviation of each locus Fst (Gst, Theta) from overall value. Analyze of index of genetic differentiation (I) is performed according to (F_{STk}F_{ST})/F_{ST}, where F_{STk} is value for individual locus and F_{ST} for all loci. Index for each locus shows intensity and direction of deviation from overall value. Statistical probability is estimated by permutation. In this way you can make assessment of the relevance impact of each locus genetic differentiation to the overall genetic differentiation.
Relative genetic differentiation (R) is proportion of each locus Fst deviation into total deviation (all observed loci from overall Fst value). It expressed as percentage.
Sample input file 
Sample of result 


Fig. BarChart  Index of Genetic Differentiation Fig. PieChart  Relative Genetic Differentiation 
How to citate IGD
Pojskic N, Sator E. 2013. IGD: Index of Genetic Differentiation.
INGEB, University of Sarajevo.
Reference
Bosanski:
Pojskić N (2005): Polimorfizam mikrosatelitnih markera
nuklearnog genoma u bh. populacijama salmonida. Doktorska teza,
Prirodnomatematički fakultet, Univerzitet u Sarajevu, COBISS.BHID: 16348934
Pojskic N, Silajdzic E, Kalamujic B, KapurPojskic L, Lasic L, Tulic U,
Hadziselimovic R. 2013. Polymorphic Alu insertions in human populations of
Bosnia and Herzegovina. Annals of Human Biology
40(2): 181–185.
English:
Pojskić N (2005): Polymorphism of microsatellite markers
in the nuclear genome within BH populations of salmonids. PhD. thesis, Faculty
of Science, University of Sarajevo, COBISS.BHID: 16348934
Pojskic N, Silajdzic E, Kalamujic B, KapurPojskic L, Lasic L, Tulic U,
Hadziselimovic R. 2013. Polymorphic Alu insertions in human populations of
Bosnia and Herzegovina. Annals of Human Biology
40(2): 181–185.